Commit Graph

28 Commits

Author SHA1 Message Date
Arthur Lu
07c1ea0c40 fix version numbers 2022-03-14 04:35:04 +00:00
Arthur Lu
44569c9fcf generalized keyword argument handling for:
Clustering.py, CorrelationTest.py, KNN.py, NaiveBayes.py
2022-02-08 07:29:47 +00:00
Arthur Lu
237e69b732 fix minor bugs in RandomForest.py 2022-02-04 08:50:56 +00:00
Arthur Lu
30a2334d54 fixed import error in Analysis,
updated unit tests
2021-11-18 09:51:39 +00:00
Arthur Lu
a50be44c18 Merge pull request #84 from titanscouting/typehinting-docstrings
Grab docstrings for Analysis to analysis-v4
2021-11-18 01:30:51 -08:00
Arthur Lu
3dabe87ead removed unessasary comments,
updated version and changelog
2021-11-18 09:24:52 +00:00
Arthur Lu
3c868672c9 finished Analysis docstrings,
removed typehinting to rework
2021-11-18 09:23:19 +00:00
Arthur Lu
27a77c3edb added type hinting for a few functions,
added typedef module to hold custom typings

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2021-11-16 20:17:46 +00:00
Arthur Lu
a34a36bdd8 populated __init__.py for metrics submodule 2021-11-12 07:42:20 +00:00
Arthur Lu
dad195a00f fixed/optimized imports,
fixed headers

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2021-11-09 22:52:04 +00:00
Arthur Lu
d57745547f Merge pull request #82 from titanscouting/improve-clustering
Added new clustering tools and reorganize existing ones
2021-09-27 15:32:12 -07:00
Arthur Lu
3606a072c4 added normalization preprocessing to Clustering
added unit tests for normalized clustering
2021-07-26 18:17:42 +00:00
Arthur Lu
3e99869d5d added dbscan and spectral to Clustering.py 2021-07-15 23:11:42 +00:00
Arthur Lu
9414cc948e removed matplotlib from requirements 2021-05-27 21:39:50 +00:00
Arthur Lu
4923881829 Added Clustering.py
moved kmeans from Analysis to Clustering
2021-05-26 07:41:32 +00:00
Arthur Lu
924b48fe63 Analysis v 3.0.4 2021-05-26 07:35:53 +00:00
Arthur Lu
23329da2b5 started branch for analysis v4 dev
deprecated old modules
2021-05-26 07:27:09 +00:00
Arthur Lu
60beaa4563 tra-analysis v 3.0.0 aggregate PR (#73)
* reflected doc changes to README.md

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* tra_analysis v 2.1.0-alpha.1

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* changed setup.py to use __version__ from source
added Topic and keywords

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* updated Supported Platforms in README.md

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved required files back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved security back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved security back to parent
moved contributing back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* add PR template

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved to parent folder

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved meta files to .github folder

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* Analysis.py v 3.0.1

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* updated test_analysis for submodules, and added missing numpy import in Sort.py

* fixed item one of Issue #58

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* readded cache searching in postCreateCommand

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* added myself as an author

* feat: created kivy gui boilerplate

* added Kivy to requirements.txt

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* feat: gui with placeholders

* fix: changed config.json path

* migrated docker base image to debian

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* style: spaces to tabs

* migrated to ubuntu

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed issues

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fix: docker build?

* fix: use ubuntu bionic

* fix: get kivy installed

* @ltcptgeneral can't spell

* optim dockerfile for not installing unused packages

* install basic stuff while building the container

* use prebuilt image for development

* install pylint on base image

* rename and use new kivy

* tests: added tests for Array and CorrelationTest

Both are not working due to errors

* use new thing

* use 20.04 base

* symlink pip3 to pip

* use pip instead of pip3

* equation.Expression.py v 0.0.1-alpha
added corresponding .pyc to .gitignore

* parser.py v 0.0.2-alpha

* added pyparsing to requirements.txt

* parser v 0.0.4-alpha

* Equation v 0.0.1-alpha

* added Equation to tra_analysis imports

* tests: New unit tests for submoduling (#66)

* feat: created kivy gui boilerplate

* migrated docker base image to debian

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* migrated to ubuntu

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed issues

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fix: docker build?

* fix: use ubuntu bionic

* fix: get kivy installed

* @ltcptgeneral can't spell

* optim dockerfile for not installing unused packages

* install basic stuff while building the container

* use prebuilt image for development

* install pylint on base image

* rename and use new kivy

* tests: added tests for Array and CorrelationTest

Both are not working due to errors

* fix: Array no longer has *args and CorrelationTest functions no longer have self in the arguments

* use new thing

* use 20.04 base

* symlink pip3 to pip

* use pip instead of pip3

* tra_analysis v 2.1.0-alpha.2
SVM v 1.0.1
added unvalidated SVM unit tests

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed version number

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* tests: added tests for ClassificationMetric

* partially fixed and commented out svm unit tests

* fixed some SVM unit tests

* added installing pytest to devcontainer.json

* fix: small fixes to KNN

Namely, removing self from parameters and passing correct arguments to KNeighborsClassifier constructor

* fix, test: Added tests for KNN and NaiveBayes.

Also made some small fixes in KNN, NaiveBayes, and RegressionMetric

* test: finished unit tests except for StatisticalTest

Also made various small fixes and style changes

* StatisticalTest v 1.0.1

* fixed RegressionMetric unit test
temporarily disabled CorrelationTest unit tests

* tra_analysis v 2.1.0-alpha.3

* readded __all__

* fix: floating point issues in unit tests for CorrelationTest

Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: ltcptgeneral <learthurgo@gmail.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: jzpan1 <panzhenyu2014@gmail.com>

* fixed depreciated escape sequences

* ficed tests, indent, import in test_analysis

* changed version to 3.0.0
added backwards compatibility

* ficed pytest install in container

* removed GUI changes

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* incremented version to rc.1 (release candidate 1)

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* fixed NaiveBayes __changelog__

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* fix: __setitem__  == to single =

* Array v 1.0.1

* Revert "Array v 1.0.1"

This reverts commit 59783b79f7.

* Array v 1.0.1

* Array.py v 1.0.2
added more Array unit tests

* cleaned .gitignore
tra_analysis v 3.0.0-rc2

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* added *.pyc to gitignore
finished subdividing test_analysis

* feat: gui layout + basic func

* Froze and removed superscript (data-analysis)

* remove data-analysis deps install for devcontainer

* tukey pairwise comparison and multicomparison but no critical q-values

* quick patch for devcontainer.json

* better fix for devcontainer.json

* fixed some styling in StatisticalTest
removed print statement in StatisticalTest unit tests

* update analysis tests to be more effecient

* don't use loop for test_nativebayes

* removed useless secondary docker files

* tra-analysis v 3.0.0

Co-authored-by: James Pan <panzhenyu2014@gmail.com>
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: zpan1 <72054510+zpan1@users.noreply.github.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: = <=>
Co-authored-by: Dev Singh <dsingh@imsa.edu>
Co-authored-by: zpan1 <zpan@imsa.edu>
2021-04-28 19:33:50 -05:00
Dev Singh
88f68782f7 Implement fitting to circle using LSC and HyperFit (#45)
* chore: add pylint to devcontainer

Signed-off-by: Dev Singh <dev@devksingh.com>

* feat: init LSC fitting

cuda and cpu-based LSC fitting using cupy and numpy

Signed-off-by: Dev Singh <dev@devksingh.com>

* docs: add changelog entry and module to class list

Signed-off-by: Dev Singh <dev@devksingh.com>

* docs: fix typo in comment

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: only import cupy if cuda available

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: move to own file, abandon cupy

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: remove numba dep

Signed-off-by: Dev Singh <dev@devksingh.com>

* deps: remove cupy dep

Signed-off-by: Dev Singh <dev@devksingh.com>

* feat: add tests

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: correct indentation

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: variable names

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: add self when refering to coords

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: numpy ordering

Signed-off-by: Dev Singh <dev@devksingh.com>

* docs: remove version bump, nomaintain

add notice that module is not actively maintained, may be removed in future release

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: remove hyperfit as not being impled

Signed-off-by: Dev Singh <dev@devksingh.com>
2020-09-24 21:06:30 -05:00
Arthur Lu
6b5de9706e analysis.py v 2.3.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-19 23:14:46 +00:00
Arthur Lu
f03101e09c analysis.py v 2.3.0
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-19 22:04:24 +00:00
Arthur Lu
9a9a27cf44 analysis.py v 2.2.3
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-18 21:55:59 +00:00
Arthur Lu
00605afcd7 analysis.py v 2.2.2
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-17 02:11:44 +00:00
Arthur Lu
245a47bdd2 analysis.py v 2.2.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-08-10 21:25:25 +00:00
Arthur Lu
3e335756e1 Merge branch 'master' into tra-service 2020-08-10 16:11:38 -05:00
Arthur Lu
8cea479880 renamed analysis folder to tra_analysis
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-08-10 21:01:50 +00:00
Dev Singh
38ab14bd03 docs
Signed-off-by: Dev Singh <dev@devksingh.com>
2020-08-10 14:53:22 -05:00
Dev Singh
23b3966c54 Implement CD with building on tags to PyPI (#34)
* Create python-publish.yml

* populated publish-analysis.yml
moved legacy versions of analysis to seperate subfolder

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* attempt to fix issue with publish action

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* another attempt o fix publish-analysis.yml

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* this should work now

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* pypa can't take just one package so i'm trying all

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* this should totally work now

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* trying removing custom dir

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* rename analysis to tra_analysis, bump version to 2.0.0

* remove old packages which are already on github releases

* remove pycache

* removed ipynb_checkpoints

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* build

* do the dir thing

* trying removing custom dir

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
Signed-off-by: Dev Singh <dev@devksingh.com>

* rename analysis to tra_analysis, bump version to 2.0.0

Signed-off-by: Dev Singh <dev@devksingh.com>

* remove old packages which are already on github releases

Signed-off-by: Dev Singh <dev@devksingh.com>

* remove pycache

Signed-off-by: Dev Singh <dev@devksingh.com>

* build

Signed-off-by: Dev Singh <dev@devksingh.com>

* removed ipynb_checkpoints

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
Signed-off-by: Dev Singh <dev@devksingh.com>

* do the dir thing

Signed-off-by: Dev Singh <dev@devksingh.com>

* Revert "do the dir thing"

This reverts commit 2eb7ffca8d.

* correct dir

* set correct yaml positions

Signed-off-by: Dev Singh <dev@devksingh.com>

* attempt to set correct dir

Signed-off-by: Dev Singh <dev@devksingh.com>

* run on tags only

Signed-off-by: Dev Singh <dev@devksingh.com>

* remove all caches from vcs

Signed-off-by: Dev Singh <dev@devksingh.com>

* bump version for testing

Signed-off-by: Dev Singh <dev@devksingh.com>

* remove broke build

Signed-off-by: Dev Singh <dev@devksingh.com>

* dont upload dists to github

Signed-off-by: Dev Singh <dev@devksingh.com>

* bump to 2.0.2 for testing

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix yaml

Signed-off-by: Dev Singh <dev@devksingh.com>

* update docs

Signed-off-by: Dev Singh <dev@devksingh.com>

* add to readme

Signed-off-by: Dev Singh <dev@devksingh.com>

* run only on master

Signed-off-by: Dev Singh <dev@devksingh.com>

Co-authored-by: Arthur Lu <learthurgo@gmail.com>
Co-authored-by: Dev Singh <dsingh@CentaurusRidge.localdomain>
2020-08-10 14:29:51 -05:00