tra-analysis/analysis-master/tra_analysis/equation/parser/Hybrid_Utils/equation_base.py
Arthur Lu 60beaa4563 tra-analysis v 3.0.0 aggregate PR (#73)
* reflected doc changes to README.md

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* tra_analysis v 2.1.0-alpha.1

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* changed setup.py to use __version__ from source
added Topic and keywords

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* updated Supported Platforms in README.md

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved required files back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved security back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved security back to parent
moved contributing back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* add PR template

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved to parent folder

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved meta files to .github folder

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* Analysis.py v 3.0.1

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* updated test_analysis for submodules, and added missing numpy import in Sort.py

* fixed item one of Issue #58

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* readded cache searching in postCreateCommand

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* added myself as an author

* feat: created kivy gui boilerplate

* added Kivy to requirements.txt

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* feat: gui with placeholders

* fix: changed config.json path

* migrated docker base image to debian

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* style: spaces to tabs

* migrated to ubuntu

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed issues

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fix: docker build?

* fix: use ubuntu bionic

* fix: get kivy installed

* @ltcptgeneral can't spell

* optim dockerfile for not installing unused packages

* install basic stuff while building the container

* use prebuilt image for development

* install pylint on base image

* rename and use new kivy

* tests: added tests for Array and CorrelationTest

Both are not working due to errors

* use new thing

* use 20.04 base

* symlink pip3 to pip

* use pip instead of pip3

* equation.Expression.py v 0.0.1-alpha
added corresponding .pyc to .gitignore

* parser.py v 0.0.2-alpha

* added pyparsing to requirements.txt

* parser v 0.0.4-alpha

* Equation v 0.0.1-alpha

* added Equation to tra_analysis imports

* tests: New unit tests for submoduling (#66)

* feat: created kivy gui boilerplate

* migrated docker base image to debian

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* migrated to ubuntu

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed issues

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fix: docker build?

* fix: use ubuntu bionic

* fix: get kivy installed

* @ltcptgeneral can't spell

* optim dockerfile for not installing unused packages

* install basic stuff while building the container

* use prebuilt image for development

* install pylint on base image

* rename and use new kivy

* tests: added tests for Array and CorrelationTest

Both are not working due to errors

* fix: Array no longer has *args and CorrelationTest functions no longer have self in the arguments

* use new thing

* use 20.04 base

* symlink pip3 to pip

* use pip instead of pip3

* tra_analysis v 2.1.0-alpha.2
SVM v 1.0.1
added unvalidated SVM unit tests

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed version number

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* tests: added tests for ClassificationMetric

* partially fixed and commented out svm unit tests

* fixed some SVM unit tests

* added installing pytest to devcontainer.json

* fix: small fixes to KNN

Namely, removing self from parameters and passing correct arguments to KNeighborsClassifier constructor

* fix, test: Added tests for KNN and NaiveBayes.

Also made some small fixes in KNN, NaiveBayes, and RegressionMetric

* test: finished unit tests except for StatisticalTest

Also made various small fixes and style changes

* StatisticalTest v 1.0.1

* fixed RegressionMetric unit test
temporarily disabled CorrelationTest unit tests

* tra_analysis v 2.1.0-alpha.3

* readded __all__

* fix: floating point issues in unit tests for CorrelationTest

Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: ltcptgeneral <learthurgo@gmail.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: jzpan1 <panzhenyu2014@gmail.com>

* fixed depreciated escape sequences

* ficed tests, indent, import in test_analysis

* changed version to 3.0.0
added backwards compatibility

* ficed pytest install in container

* removed GUI changes

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* incremented version to rc.1 (release candidate 1)

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* fixed NaiveBayes __changelog__

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* fix: __setitem__  == to single =

* Array v 1.0.1

* Revert "Array v 1.0.1"

This reverts commit 59783b79f7.

* Array v 1.0.1

* Array.py v 1.0.2
added more Array unit tests

* cleaned .gitignore
tra_analysis v 3.0.0-rc2

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* added *.pyc to gitignore
finished subdividing test_analysis

* feat: gui layout + basic func

* Froze and removed superscript (data-analysis)

* remove data-analysis deps install for devcontainer

* tukey pairwise comparison and multicomparison but no critical q-values

* quick patch for devcontainer.json

* better fix for devcontainer.json

* fixed some styling in StatisticalTest
removed print statement in StatisticalTest unit tests

* update analysis tests to be more effecient

* don't use loop for test_nativebayes

* removed useless secondary docker files

* tra-analysis v 3.0.0

Co-authored-by: James Pan <panzhenyu2014@gmail.com>
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: zpan1 <72054510+zpan1@users.noreply.github.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: = <=>
Co-authored-by: Dev Singh <dsingh@imsa.edu>
Co-authored-by: zpan1 <zpan@imsa.edu>
2021-04-28 19:33:50 -05:00

106 lines
5.4 KiB
Python

try:
import numpy as np
has_numpy = True
except ImportError:
import math
has_numpy = False
try:
import scipy.constants
has_scipy = True
except ImportError:
has_scipy = False
import operator as op
from .similar import sim, nsim, gsim, lsim
def equation_extend(core):
def product(*args):
if len(args) == 1 and has_numpy:
return np.prod(args[0])
else:
return reduce(op.mul,args,1)
def sumargs(*args):
if len(args) == 1:
return sum(args[0])
else:
return sum(args)
core.addOp('+',"({0:s} + {1:s})","\\left({0:s} + {1:s}\\right)",False,3,op.add)
core.addOp('-',"({0:s} - {1:s})","\\left({0:s} - {1:s}\\right)",False,3,op.sub)
core.addOp('*',"({0:s} * {1:s})","\\left({0:s} \\times {1:s}\\right)",False,2,op.mul)
core.addOp('/',"({0:s} / {1:s})","\\frac{{{0:s}}}{{{1:s}}}",False,2,op.truediv)
core.addOp('%',"({0:s} % {1:s})","\\left({0:s} \\bmod {1:s}\\right)",False,2,op.mod)
core.addOp('^',"({0:s} ^ {1:s})","{0:s}^{{{1:s}}}",False,1,op.pow)
core.addOp('**',"({0:s} ^ {1:s})","{0:s}^{{{1:s}}}",False,1,op.pow)
core.addOp('&',"({0:s} & {1:s})","\\left({0:s} \\land {1:s}\\right)",False,4,op.and_)
core.addOp('|',"({0:s} | {1:s})","\\left({0:s} \\lor {1:s}\\right)",False,4,op.or_)
core.addOp('</>',"({0:s} </> {1:s})","\\left({0:s} \\oplus {1:s}\\right)",False,4,op.xor)
core.addOp('&|',"({0:s} </> {1:s})","\\left({0:s} \\oplus {1:s}\\right)",False,4,op.xor)
core.addOp('|&',"({0:s} </> {1:s})","\\left({0:s} \\oplus {1:s}\\right)",False,4,op.xor)
core.addOp('==',"({0:s} == {1:s})","\\left({0:s} = {1:s}\\right)",False,5,op.eq)
core.addOp('=',"({0:s} == {1:s})","\\left({0:s} = {1:s}\\right)",False,5,op.eq)
core.addOp('~',"({0:s} ~ {1:s})","\\left({0:s} \\approx {1:s}\\right)",False,5,sim)
core.addOp('!~',"({0:s} !~ {1:s})","\\left({0:s} \\not\\approx {1:s}\\right)",False,5,nsim)
core.addOp('!=',"({0:s} != {1:s})","\\left({0:s} \\neg {1:s}\\right)",False,5,op.ne)
core.addOp('<>',"({0:s} != {1:s})","\\left({0:s} \\neg {1:s}\\right)",False,5,op.ne)
core.addOp('><',"({0:s} != {1:s})","\\left({0:s} \\neg {1:s}\\right)",False,5,op.ne)
core.addOp('<',"({0:s} < {1:s})","\\left({0:s} < {1:s}\\right)",False,5,op.lt)
core.addOp('>',"({0:s} > {1:s})","\\left({0:s} > {1:s}\\right)",False,5,op.gt)
core.addOp('<=',"({0:s} <= {1:s})","\\left({0:s} \\leq {1:s}\\right)",False,5,op.le)
core.addOp('>=',"({0:s} >= {1:s})","\\left({0:s} \\geq {1:s}\\right)",False,5,op.ge)
core.addOp('=<',"({0:s} <= {1:s})","\\left({0:s} \\leq {1:s}\\right)",False,5,op.le)
core.addOp('=>',"({0:s} >= {1:s})","\\left({0:s} \\geq {1:s}\\right)",False,5,op.ge)
core.addOp('<~',"({0:s} <~ {1:s})","\\left({0:s} \lessapprox {1:s}\\right)",False,5,lsim)
core.addOp('>~',"({0:s} >~ {1:s})","\\left({0:s} \\gtrapprox {1:s}\\right)",False,5,gsim)
core.addOp('~<',"({0:s} <~ {1:s})","\\left({0:s} \lessapprox {1:s}\\right)",False,5,lsim)
core.addOp('~>',"({0:s} >~ {1:s})","\\left({0:s} \\gtrapprox {1:s}\\right)",False,5,gsim)
core.addUnaryOp('!',"(!{0:s})","\\neg{0:s}",op.not_)
core.addUnaryOp('-',"-{0:s}","-{0:s}",op.neg)
core.addFn('abs',"abs({0:s})","\\left|{0:s}\\right|",1,op.abs)
core.addFn('sum',"sum({0:s})","\\sum\\left({0:s}\\right)",'+',sumargs)
core.addFn('prod',"prod({0:s})","\\prod\\left({0:s}\\right)",'+',product)
if has_numpy:
core.addFn('floor',"floor({0:s})","\\lfloor {0:s} \\rfloor",1,np.floor)
core.addFn('ceil',"ceil({0:s})","\\lceil {0:s} \\rceil",1,np.ceil)
core.addFn('round',"round({0:s})","\\lfloor {0:s} \\rceil",1,np.round)
core.addFn('sin',"sin({0:s})","\\sin\\left({0:s}\\right)",1,np.sin)
core.addFn('cos',"cos({0:s})","\\cos\\left({0:s}\\right)",1,np.cos)
core.addFn('tan',"tan({0:s})","\\tan\\left({0:s}\\right)",1,np.tan)
core.addFn('re',"re({0:s})","\\Re\\left({0:s}\\right)",1,np.real)
core.addFn('im',"re({0:s})","\\Im\\left({0:s}\\right)",1,np.imag)
core.addFn('sqrt',"sqrt({0:s})","\\sqrt{{{0:s}}}",1,np.sqrt)
core.addConst("pi",np.pi)
core.addConst("e",np.e)
core.addConst("Inf",np.Inf)
core.addConst("NaN",np.NaN)
else:
core.addFn('floor',"floor({0:s})","\\lfloor {0:s} \\rfloor",1,math.floor)
core.addFn('ceil',"ceil({0:s})","\\lceil {0:s} \\rceil",1,math.ceil)
core.addFn('round',"round({0:s})","\\lfloor {0:s} \\rceil",1,round)
core.addFn('sin',"sin({0:s})","\\sin\\left({0:s}\\right)",1,math.sin)
core.addFn('cos',"cos({0:s})","\\cos\\left({0:s}\\right)",1,math.cos)
core.addFn('tan',"tan({0:s})","\\tan\\left({0:s}\\right)",1,math.tan)
core.addFn('re',"re({0:s})","\\Re\\left({0:s}\\right)",1,complex.real)
core.addFn('im',"re({0:s})","\\Im\\left({0:s}\\right)",1,complex.imag)
core.addFn('sqrt',"sqrt({0:s})","\\sqrt{{{0:s}}}",1,math.sqrt)
core.addConst("pi",math.pi)
core.addConst("e",math.e)
core.addConst("Inf",float("Inf"))
core.addConst("NaN",float("NaN"))
if has_scipy:
core.addConst("h",scipy.constants.h)
core.addConst("hbar",scipy.constants.hbar)
core.addConst("m_e",scipy.constants.m_e)
core.addConst("m_p",scipy.constants.m_p)
core.addConst("m_n",scipy.constants.m_n)
core.addConst("c",scipy.constants.c)
core.addConst("N_A",scipy.constants.N_A)
core.addConst("mu_0",scipy.constants.mu_0)
core.addConst("eps_0",scipy.constants.epsilon_0)
core.addConst("k",scipy.constants.k)
core.addConst("G",scipy.constants.G)
core.addConst("g",scipy.constants.g)
core.addConst("q",scipy.constants.e)
core.addConst("R",scipy.constants.R)
core.addConst("sigma",scipy.constants.e)
core.addConst("Rb",scipy.constants.Rydberg)