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https://github.com/titanscouting/tra-analysis.git
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60beaa4563
* reflected doc changes to README.md
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* tra_analysis v 2.1.0-alpha.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* changed setup.py to use __version__ from source
added Topic and keywords
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* updated Supported Platforms in README.md
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved required files back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved security back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved security back to parent
moved contributing back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* add PR template
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved to parent folder
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved meta files to .github folder
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* Analysis.py v 3.0.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* updated test_analysis for submodules, and added missing numpy import in Sort.py
* fixed item one of Issue #58
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* readded cache searching in postCreateCommand
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* added myself as an author
* feat: created kivy gui boilerplate
* added Kivy to requirements.txt
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* feat: gui with placeholders
* fix: changed config.json path
* migrated docker base image to debian
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* style: spaces to tabs
* migrated to ubuntu
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed issues
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fix: docker build?
* fix: use ubuntu bionic
* fix: get kivy installed
* @ltcptgeneral can't spell
* optim dockerfile for not installing unused packages
* install basic stuff while building the container
* use prebuilt image for development
* install pylint on base image
* rename and use new kivy
* tests: added tests for Array and CorrelationTest
Both are not working due to errors
* use new thing
* use 20.04 base
* symlink pip3 to pip
* use pip instead of pip3
* equation.Expression.py v 0.0.1-alpha
added corresponding .pyc to .gitignore
* parser.py v 0.0.2-alpha
* added pyparsing to requirements.txt
* parser v 0.0.4-alpha
* Equation v 0.0.1-alpha
* added Equation to tra_analysis imports
* tests: New unit tests for submoduling (#66)
* feat: created kivy gui boilerplate
* migrated docker base image to debian
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* migrated to ubuntu
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed issues
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fix: docker build?
* fix: use ubuntu bionic
* fix: get kivy installed
* @ltcptgeneral can't spell
* optim dockerfile for not installing unused packages
* install basic stuff while building the container
* use prebuilt image for development
* install pylint on base image
* rename and use new kivy
* tests: added tests for Array and CorrelationTest
Both are not working due to errors
* fix: Array no longer has *args and CorrelationTest functions no longer have self in the arguments
* use new thing
* use 20.04 base
* symlink pip3 to pip
* use pip instead of pip3
* tra_analysis v 2.1.0-alpha.2
SVM v 1.0.1
added unvalidated SVM unit tests
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed version number
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* tests: added tests for ClassificationMetric
* partially fixed and commented out svm unit tests
* fixed some SVM unit tests
* added installing pytest to devcontainer.json
* fix: small fixes to KNN
Namely, removing self from parameters and passing correct arguments to KNeighborsClassifier constructor
* fix, test: Added tests for KNN and NaiveBayes.
Also made some small fixes in KNN, NaiveBayes, and RegressionMetric
* test: finished unit tests except for StatisticalTest
Also made various small fixes and style changes
* StatisticalTest v 1.0.1
* fixed RegressionMetric unit test
temporarily disabled CorrelationTest unit tests
* tra_analysis v 2.1.0-alpha.3
* readded __all__
* fix: floating point issues in unit tests for CorrelationTest
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: ltcptgeneral <learthurgo@gmail.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: jzpan1 <panzhenyu2014@gmail.com>
* fixed depreciated escape sequences
* ficed tests, indent, import in test_analysis
* changed version to 3.0.0
added backwards compatibility
* ficed pytest install in container
* removed GUI changes
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* incremented version to rc.1 (release candidate 1)
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* fixed NaiveBayes __changelog__
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* fix: __setitem__ == to single =
* Array v 1.0.1
* Revert "Array v 1.0.1"
This reverts commit 59783b79f7
.
* Array v 1.0.1
* Array.py v 1.0.2
added more Array unit tests
* cleaned .gitignore
tra_analysis v 3.0.0-rc2
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* added *.pyc to gitignore
finished subdividing test_analysis
* feat: gui layout + basic func
* Froze and removed superscript (data-analysis)
* remove data-analysis deps install for devcontainer
* tukey pairwise comparison and multicomparison but no critical q-values
* quick patch for devcontainer.json
* better fix for devcontainer.json
* fixed some styling in StatisticalTest
removed print statement in StatisticalTest unit tests
* update analysis tests to be more effecient
* don't use loop for test_nativebayes
* removed useless secondary docker files
* tra-analysis v 3.0.0
Co-authored-by: James Pan <panzhenyu2014@gmail.com>
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: zpan1 <72054510+zpan1@users.noreply.github.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: = <=>
Co-authored-by: Dev Singh <dsingh@imsa.edu>
Co-authored-by: zpan1 <zpan@imsa.edu>
87 lines
2.5 KiB
Python
87 lines
2.5 KiB
Python
# Titan Robotics Team 2022: CPU fitting models
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# Written by Dev Singh
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# Notes:
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# this module is cuda-optimized (as appropriate) and vectorized (except for one small part)
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# setup:
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__version__ = "0.0.2"
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# changelog should be viewed using print(analysis.fits.__changelog__)
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__changelog__ = """changelog:
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0.0.2:
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- renamed module to Fit
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0.0.1:
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- initial release, add circle fitting with LSC
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"""
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__author__ = (
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"Dev Singh <dev@devksingh.com>"
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)
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__all__ = [
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'CircleFit'
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]
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import numpy as np
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class CircleFit:
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"""Class to fit data to a circle using the Least Square Circle (LSC) method"""
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# For more information on the LSC method, see:
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# http://www.dtcenter.org/sites/default/files/community-code/met/docs/write-ups/circle_fit.pdf
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def __init__(self, x, y, xy=None):
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self.ournp = np #todo: implement cupy correctly
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if type(x) == list:
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x = np.array(x)
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if type(y) == list:
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y = np.array(y)
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if type(xy) == list:
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xy = np.array(xy)
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if xy != None:
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self.coords = xy
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else:
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# following block combines x and y into one array if not already done
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self.coords = self.ournp.vstack(([x.T], [y.T])).T
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def calc_R(x, y, xc, yc):
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"""Returns distance between center and point"""
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return self.ournp.sqrt((x-xc)**2 + (y-yc)**2)
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def f(c, x, y):
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"""Returns distance between point and circle at c"""
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Ri = calc_R(x, y, *c)
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return Ri - Ri.mean()
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def LSC(self):
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"""Fits given data to a circle and returns the center, radius, and variance"""
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x = self.coords[:, 0]
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y = self.coords[:, 1]
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# guessing at a center
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x_m = self.ournp.mean(x)
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y_m = self.ournp.mean(y)
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# calculation of the reduced coordinates
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u = x - x_m
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v = y - y_m
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# linear system defining the center (uc, vc) in reduced coordinates:
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# Suu * uc + Suv * vc = (Suuu + Suvv)/2
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# Suv * uc + Svv * vc = (Suuv + Svvv)/2
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Suv = self.ournp.sum(u*v)
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Suu = self.ournp.sum(u**2)
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Svv = self.ournp.sum(v**2)
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Suuv = self.ournp.sum(u**2 * v)
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Suvv = self.ournp.sum(u * v**2)
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Suuu = self.ournp.sum(u**3)
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Svvv = self.ournp.sum(v**3)
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# Solving the linear system
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A = self.ournp.array([ [ Suu, Suv ], [Suv, Svv]])
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B = self.ournp.array([ Suuu + Suvv, Svvv + Suuv ])/2.0
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uc, vc = self.ournp.linalg.solve(A, B)
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xc_1 = x_m + uc
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yc_1 = y_m + vc
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# Calculate the distances from center (xc_1, yc_1)
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Ri_1 = self.ournp.sqrt((x-xc_1)**2 + (y-yc_1)**2)
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R_1 = self.ournp.mean(Ri_1)
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# calculate residual error
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residu_1 = self.ournp.sum((Ri_1-R_1)**2)
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return (xc_1, yc_1, R_1, residu_1) |