mirror of
https://github.com/titanscouting/tra-analysis.git
synced 2024-12-26 17:49:09 +00:00
60beaa4563
* reflected doc changes to README.md
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* tra_analysis v 2.1.0-alpha.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* changed setup.py to use __version__ from source
added Topic and keywords
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* updated Supported Platforms in README.md
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved required files back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved security back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved security back to parent
moved contributing back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* add PR template
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved to parent folder
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved meta files to .github folder
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* Analysis.py v 3.0.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* updated test_analysis for submodules, and added missing numpy import in Sort.py
* fixed item one of Issue #58
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* readded cache searching in postCreateCommand
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* added myself as an author
* feat: created kivy gui boilerplate
* added Kivy to requirements.txt
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* feat: gui with placeholders
* fix: changed config.json path
* migrated docker base image to debian
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* style: spaces to tabs
* migrated to ubuntu
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed issues
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fix: docker build?
* fix: use ubuntu bionic
* fix: get kivy installed
* @ltcptgeneral can't spell
* optim dockerfile for not installing unused packages
* install basic stuff while building the container
* use prebuilt image for development
* install pylint on base image
* rename and use new kivy
* tests: added tests for Array and CorrelationTest
Both are not working due to errors
* use new thing
* use 20.04 base
* symlink pip3 to pip
* use pip instead of pip3
* equation.Expression.py v 0.0.1-alpha
added corresponding .pyc to .gitignore
* parser.py v 0.0.2-alpha
* added pyparsing to requirements.txt
* parser v 0.0.4-alpha
* Equation v 0.0.1-alpha
* added Equation to tra_analysis imports
* tests: New unit tests for submoduling (#66)
* feat: created kivy gui boilerplate
* migrated docker base image to debian
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* migrated to ubuntu
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed issues
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fix: docker build?
* fix: use ubuntu bionic
* fix: get kivy installed
* @ltcptgeneral can't spell
* optim dockerfile for not installing unused packages
* install basic stuff while building the container
* use prebuilt image for development
* install pylint on base image
* rename and use new kivy
* tests: added tests for Array and CorrelationTest
Both are not working due to errors
* fix: Array no longer has *args and CorrelationTest functions no longer have self in the arguments
* use new thing
* use 20.04 base
* symlink pip3 to pip
* use pip instead of pip3
* tra_analysis v 2.1.0-alpha.2
SVM v 1.0.1
added unvalidated SVM unit tests
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed version number
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* tests: added tests for ClassificationMetric
* partially fixed and commented out svm unit tests
* fixed some SVM unit tests
* added installing pytest to devcontainer.json
* fix: small fixes to KNN
Namely, removing self from parameters and passing correct arguments to KNeighborsClassifier constructor
* fix, test: Added tests for KNN and NaiveBayes.
Also made some small fixes in KNN, NaiveBayes, and RegressionMetric
* test: finished unit tests except for StatisticalTest
Also made various small fixes and style changes
* StatisticalTest v 1.0.1
* fixed RegressionMetric unit test
temporarily disabled CorrelationTest unit tests
* tra_analysis v 2.1.0-alpha.3
* readded __all__
* fix: floating point issues in unit tests for CorrelationTest
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: ltcptgeneral <learthurgo@gmail.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: jzpan1 <panzhenyu2014@gmail.com>
* fixed depreciated escape sequences
* ficed tests, indent, import in test_analysis
* changed version to 3.0.0
added backwards compatibility
* ficed pytest install in container
* removed GUI changes
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* incremented version to rc.1 (release candidate 1)
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* fixed NaiveBayes __changelog__
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* fix: __setitem__ == to single =
* Array v 1.0.1
* Revert "Array v 1.0.1"
This reverts commit 59783b79f7
.
* Array v 1.0.1
* Array.py v 1.0.2
added more Array unit tests
* cleaned .gitignore
tra_analysis v 3.0.0-rc2
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* added *.pyc to gitignore
finished subdividing test_analysis
* feat: gui layout + basic func
* Froze and removed superscript (data-analysis)
* remove data-analysis deps install for devcontainer
* tukey pairwise comparison and multicomparison but no critical q-values
* quick patch for devcontainer.json
* better fix for devcontainer.json
* fixed some styling in StatisticalTest
removed print statement in StatisticalTest unit tests
* update analysis tests to be more effecient
* don't use loop for test_nativebayes
* removed useless secondary docker files
* tra-analysis v 3.0.0
Co-authored-by: James Pan <panzhenyu2014@gmail.com>
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: zpan1 <72054510+zpan1@users.noreply.github.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: = <=>
Co-authored-by: Dev Singh <dsingh@imsa.edu>
Co-authored-by: zpan1 <zpan@imsa.edu>
391 lines
6.9 KiB
Python
391 lines
6.9 KiB
Python
# Only included for backwards compatibility! Do not update, Sort is preferred and supported.
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class Sort: # if you haven't used a sort, then you've never lived
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def quicksort(self, a):
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def sort(array):
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less = []
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equal = []
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greater = []
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if len(array) > 1:
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pivot = array[0]
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for x in array:
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if x < pivot:
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less.append(x)
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elif x == pivot:
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equal.append(x)
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elif x > pivot:
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greater.append(x)
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return sort(less)+equal+sort(greater)
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else:
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return array
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return np.array(sort(a))
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def mergesort(self, a):
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def sort(array):
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array = array
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if len(array) >1:
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middle = len(array) // 2
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L = array[:middle]
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R = array[middle:]
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sort(L)
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sort(R)
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i = j = k = 0
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while i < len(L) and j < len(R):
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if L[i] < R[j]:
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array[k] = L[i]
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i+= 1
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else:
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array[k] = R[j]
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j+= 1
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k+= 1
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while i < len(L):
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array[k] = L[i]
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i+= 1
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k+= 1
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while j < len(R):
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array[k] = R[j]
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j+= 1
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k+= 1
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return array
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return sort(a)
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def introsort(self, a):
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def sort(array, start, end, maxdepth):
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array = array
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if end - start <= 1:
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return
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elif maxdepth == 0:
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heapsort(array, start, end)
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else:
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p = partition(array, start, end)
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sort(array, start, p + 1, maxdepth - 1)
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sort(array, p + 1, end, maxdepth - 1)
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return array
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def partition(array, start, end):
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pivot = array[start]
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i = start - 1
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j = end
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while True:
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i = i + 1
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while array[i] < pivot:
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i = i + 1
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j = j - 1
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while array[j] > pivot:
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j = j - 1
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if i >= j:
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return j
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swap(array, i, j)
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def swap(array, i, j):
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array[i], array[j] = array[j], array[i]
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def heapsort(array, start, end):
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build_max_heap(array, start, end)
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for i in range(end - 1, start, -1):
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swap(array, start, i)
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max_heapify(array, index=0, start=start, end=i)
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def build_max_heap(array, start, end):
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def parent(i):
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return (i - 1)//2
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length = end - start
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index = parent(length - 1)
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while index >= 0:
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max_heapify(array, index, start, end)
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index = index - 1
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def max_heapify(array, index, start, end):
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def left(i):
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return 2*i + 1
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def right(i):
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return 2*i + 2
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size = end - start
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l = left(index)
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r = right(index)
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if (l < size and array[start + l] > array[start + index]):
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largest = l
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else:
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largest = index
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if (r < size and array[start + r] > array[start + largest]):
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largest = r
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if largest != index:
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swap(array, start + largest, start + index)
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max_heapify(array, largest, start, end)
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maxdepth = (len(a).bit_length() - 1)*2
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return sort(a, 0, len(a), maxdepth)
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def heapsort(self, a):
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def sort(array):
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array = array
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n = len(array)
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for i in range(n//2 - 1, -1, -1):
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heapify(array, n, i)
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for i in range(n-1, 0, -1):
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array[i], array[0] = array[0], array[i]
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heapify(array, i, 0)
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return array
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def heapify(array, n, i):
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array = array
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largest = i
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l = 2 * i + 1
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r = 2 * i + 2
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if l < n and array[i] < array[l]:
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largest = l
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if r < n and array[largest] < array[r]:
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largest = r
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if largest != i:
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array[i],array[largest] = array[largest],array[i]
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heapify(array, n, largest)
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return array
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return sort(a)
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def insertionsort(self, a):
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def sort(array):
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array = array
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for i in range(1, len(array)):
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key = array[i]
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j = i-1
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while j >=0 and key < array[j] :
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array[j+1] = array[j]
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j -= 1
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array[j+1] = key
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return array
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return sort(a)
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def timsort(self, a, block = 32):
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BLOCK = block
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def sort(array, n):
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array = array
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for i in range(0, n, BLOCK):
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insertionsort(array, i, min((i+31), (n-1)))
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size = BLOCK
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while size < n:
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for left in range(0, n, 2*size):
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mid = left + size - 1
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right = min((left + 2*size - 1), (n-1))
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merge(array, left, mid, right)
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size = 2*size
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return array
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def insertionsort(array, left, right):
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array = array
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for i in range(left + 1, right+1):
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temp = array[i]
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j = i - 1
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while j >= left and array[j] > temp :
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array[j+1] = array[j]
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j -= 1
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array[j+1] = temp
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return array
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def merge(array, l, m, r):
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len1, len2 = m - l + 1, r - m
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left, right = [], []
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for i in range(0, len1):
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left.append(array[l + i])
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for i in range(0, len2):
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right.append(array[m + 1 + i])
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i, j, k = 0, 0, l
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while i < len1 and j < len2:
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if left[i] <= right[j]:
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array[k] = left[i]
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i += 1
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else:
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array[k] = right[j]
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j += 1
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k += 1
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while i < len1:
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array[k] = left[i]
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k += 1
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i += 1
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while j < len2:
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array[k] = right[j]
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k += 1
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j += 1
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return sort(a, len(a))
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def selectionsort(self, a):
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array = a
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for i in range(len(array)):
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min_idx = i
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for j in range(i+1, len(array)):
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if array[min_idx] > array[j]:
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min_idx = j
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array[i], array[min_idx] = array[min_idx], array[i]
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return array
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def shellsort(self, a):
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array = a
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n = len(array)
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gap = n//2
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while gap > 0:
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for i in range(gap,n):
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temp = array[i]
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j = i
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while j >= gap and array[j-gap] >temp:
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array[j] = array[j-gap]
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j -= gap
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array[j] = temp
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gap //= 2
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return array
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def bubblesort(self, a):
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def sort(array):
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for i, num in enumerate(array):
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try:
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if array[i+1] < num:
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array[i] = array[i+1]
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array[i+1] = num
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sort(array)
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except IndexError:
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pass
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return array
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return sort(a)
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def cyclesort(self, a):
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def sort(array):
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array = array
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writes = 0
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for cycleStart in range(0, len(array) - 1):
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item = array[cycleStart]
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pos = cycleStart
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for i in range(cycleStart + 1, len(array)):
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if array[i] < item:
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pos += 1
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if pos == cycleStart:
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continue
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while item == array[pos]:
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pos += 1
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array[pos], item = item, array[pos]
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writes += 1
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while pos != cycleStart:
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pos = cycleStart
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for i in range(cycleStart + 1, len(array)):
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if array[i] < item:
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pos += 1
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while item == array[pos]:
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pos += 1
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array[pos], item = item, array[pos]
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writes += 1
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return array
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return sort(a)
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def cocktailsort(self, a):
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def sort(array):
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array = array
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n = len(array)
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swapped = True
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start = 0
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end = n-1
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while (swapped == True):
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swapped = False
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for i in range (start, end):
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if (array[i] > array[i + 1]) :
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array[i], array[i + 1]= array[i + 1], array[i]
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swapped = True
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if (swapped == False):
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break
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swapped = False
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end = end-1
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for i in range(end-1, start-1, -1):
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if (array[i] > array[i + 1]):
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array[i], array[i + 1] = array[i + 1], array[i]
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swapped = True
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start = start + 1
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return array
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return sort(a) |