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https://github.com/titanscouting/tra-analysis.git
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60beaa4563
* reflected doc changes to README.md
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* tra_analysis v 2.1.0-alpha.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* changed setup.py to use __version__ from source
added Topic and keywords
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* updated Supported Platforms in README.md
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved required files back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved security back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved security back to parent
moved contributing back to parent
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* add PR template
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved to parent folder
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* moved meta files to .github folder
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* Analysis.py v 3.0.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* updated test_analysis for submodules, and added missing numpy import in Sort.py
* fixed item one of Issue #58
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* readded cache searching in postCreateCommand
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* added myself as an author
* feat: created kivy gui boilerplate
* added Kivy to requirements.txt
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* feat: gui with placeholders
* fix: changed config.json path
* migrated docker base image to debian
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* style: spaces to tabs
* migrated to ubuntu
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed issues
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fix: docker build?
* fix: use ubuntu bionic
* fix: get kivy installed
* @ltcptgeneral can't spell
* optim dockerfile for not installing unused packages
* install basic stuff while building the container
* use prebuilt image for development
* install pylint on base image
* rename and use new kivy
* tests: added tests for Array and CorrelationTest
Both are not working due to errors
* use new thing
* use 20.04 base
* symlink pip3 to pip
* use pip instead of pip3
* equation.Expression.py v 0.0.1-alpha
added corresponding .pyc to .gitignore
* parser.py v 0.0.2-alpha
* added pyparsing to requirements.txt
* parser v 0.0.4-alpha
* Equation v 0.0.1-alpha
* added Equation to tra_analysis imports
* tests: New unit tests for submoduling (#66)
* feat: created kivy gui boilerplate
* migrated docker base image to debian
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* migrated to ubuntu
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed issues
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fix: docker build?
* fix: use ubuntu bionic
* fix: get kivy installed
* @ltcptgeneral can't spell
* optim dockerfile for not installing unused packages
* install basic stuff while building the container
* use prebuilt image for development
* install pylint on base image
* rename and use new kivy
* tests: added tests for Array and CorrelationTest
Both are not working due to errors
* fix: Array no longer has *args and CorrelationTest functions no longer have self in the arguments
* use new thing
* use 20.04 base
* symlink pip3 to pip
* use pip instead of pip3
* tra_analysis v 2.1.0-alpha.2
SVM v 1.0.1
added unvalidated SVM unit tests
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* fixed version number
Signed-off-by: ltcptgeneral <learthurgo@gmail.com>
* tests: added tests for ClassificationMetric
* partially fixed and commented out svm unit tests
* fixed some SVM unit tests
* added installing pytest to devcontainer.json
* fix: small fixes to KNN
Namely, removing self from parameters and passing correct arguments to KNeighborsClassifier constructor
* fix, test: Added tests for KNN and NaiveBayes.
Also made some small fixes in KNN, NaiveBayes, and RegressionMetric
* test: finished unit tests except for StatisticalTest
Also made various small fixes and style changes
* StatisticalTest v 1.0.1
* fixed RegressionMetric unit test
temporarily disabled CorrelationTest unit tests
* tra_analysis v 2.1.0-alpha.3
* readded __all__
* fix: floating point issues in unit tests for CorrelationTest
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: ltcptgeneral <learthurgo@gmail.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: jzpan1 <panzhenyu2014@gmail.com>
* fixed depreciated escape sequences
* ficed tests, indent, import in test_analysis
* changed version to 3.0.0
added backwards compatibility
* ficed pytest install in container
* removed GUI changes
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* incremented version to rc.1 (release candidate 1)
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* fixed NaiveBayes __changelog__
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* fix: __setitem__ == to single =
* Array v 1.0.1
* Revert "Array v 1.0.1"
This reverts commit 59783b79f7
.
* Array v 1.0.1
* Array.py v 1.0.2
added more Array unit tests
* cleaned .gitignore
tra_analysis v 3.0.0-rc2
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
* added *.pyc to gitignore
finished subdividing test_analysis
* feat: gui layout + basic func
* Froze and removed superscript (data-analysis)
* remove data-analysis deps install for devcontainer
* tukey pairwise comparison and multicomparison but no critical q-values
* quick patch for devcontainer.json
* better fix for devcontainer.json
* fixed some styling in StatisticalTest
removed print statement in StatisticalTest unit tests
* update analysis tests to be more effecient
* don't use loop for test_nativebayes
* removed useless secondary docker files
* tra-analysis v 3.0.0
Co-authored-by: James Pan <panzhenyu2014@gmail.com>
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: zpan1 <72054510+zpan1@users.noreply.github.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: = <=>
Co-authored-by: Dev Singh <dsingh@imsa.edu>
Co-authored-by: zpan1 <zpan@imsa.edu>
164 lines
3.5 KiB
Python
164 lines
3.5 KiB
Python
# Titan Robotics Team 2022: Array submodule
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# Written by Arthur Lu
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# Notes:
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# this should be imported as a python module using 'from tra_analysis import Array'
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# setup:
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__version__ = "1.0.3"
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__changelog__ = """changelog:
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1.0.3:
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- fixed __all__
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1.0.2:
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- fixed several implementation bugs with magic methods
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1.0.1:
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- removed search and __search functions
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1.0.0:
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- ported analysis.Array() here
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"""
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__author__ = (
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"Arthur Lu <learthurgo@gmail.com>",
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)
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__all__ = [
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"Array",
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]
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import numpy as np
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import warnings
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class Array(): # tests on nd arrays independent of basic_stats
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def __init__(self, narray):
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self.array = np.array(narray)
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def __str__(self):
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return str(self.array)
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def __repr__(self):
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return str(self.array)
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def elementwise_mean(self, axis = 0): # expects arrays that are size normalized
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return np.mean(self.array, axis = axis)
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def elementwise_median(self, axis = 0):
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return np.median(self.array, axis = axis)
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def elementwise_stdev(self, axis = 0):
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return np.std(self.array, axis = axis)
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def elementwise_variance(self, axis = 0):
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return np.var(self.array, axis = axis)
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def elementwise_npmin(self, axis = 0):
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return np.amin(self.array, axis = axis)
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def elementwise_npmax(self, axis = 0):
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return np.amax(self.array, axis = axis)
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def elementwise_stats(self, axis = 0):
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_mean = self.elementwise_mean(axis = axis)
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_median = self.elementwise_median(axis = axis)
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_stdev = self.elementwise_stdev(axis = axis)
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_variance = self.elementwise_variance(axis = axis)
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_min = self.elementwise_npmin(axis = axis)
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_max = self.elementwise_npmax(axis = axis)
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return _mean, _median, _stdev, _variance, _min, _max
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def __getitem__(self, key):
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return self.array[key]
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def __setitem__(self, key, value):
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self.array[key] = value
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def __len__(self):
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return len(self.array)
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def normalize(self):
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a = np.atleast_1d(np.linalg.norm(self.array))
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a[a==0] = 1
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return Array(self.array / np.expand_dims(a, -1))
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def __add__(self, other):
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return Array(self.array + other.array)
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def __sub__(self, other):
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return Array(self.array - other.array)
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def __neg__(self):
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return Array(-self.array)
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def __abs__(self):
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return Array(abs(self.array))
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def __invert__(self):
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return Array(1/self.array)
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def __mul__(self, other):
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if(isinstance(other, Array)):
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return Array(self.array.dot(other.array))
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elif(isinstance(other, int)):
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return Array(other * self.array)
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else:
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raise Exception("unsupported multiplication between Array and " + str(type(other)))
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def __rmul__(self, other):
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return self.__mul__(other)
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def cross(self, other):
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return np.cross(self.array, other.array)
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def transpose(self):
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return Array(np.transpose(self.array))
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def sort(self, array): # depreciated
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warnings.warn("Array.sort has been depreciated in favor of Sort")
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array_length = len(array)
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if array_length <= 1:
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return array
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middle_index = int(array_length / 2)
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left = array[0:middle_index]
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right = array[middle_index:]
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left = self.sort(left)
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right = self.sort(right)
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return self.__merge(left, right)
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def __merge(self, left, right):
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sorted_list = []
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left = left[:]
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right = right[:]
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while len(left) > 0 or len(right) > 0:
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if len(left) > 0 and len(right) > 0:
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if left[0] <= right[0]:
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sorted_list.append(left.pop(0))
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else:
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sorted_list.append(right.pop(0))
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elif len(left) > 0:
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sorted_list.append(left.pop(0))
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elif len(right) > 0:
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sorted_list.append(right.pop(0))
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return sorted_list |