Commit Graph

96 Commits

Author SHA1 Message Date
Arthur Lu
9fe3bd4567 removed matplotlib from requirements 2021-05-27 21:39:50 +00:00
Arthur Lu
8215f95706 Analysis v 3.0.4 2021-05-26 07:35:53 +00:00
Arthur Lu
e6674e9c05 started branch for analysis v4 dev
deprecated old modules
2021-05-26 07:27:09 +00:00
Arthur Lu
8bf754f382 removed problematic classifier 2021-05-01 03:47:10 +00:00
Arthur Lu
9f71ab3aad
tra-analysis v 3.0.0 aggregate PR (#73)
* reflected doc changes to README.md

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* tra_analysis v 2.1.0-alpha.1

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* changed setup.py to use __version__ from source
added Topic and keywords

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* updated Supported Platforms in README.md

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved required files back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved security back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved security back to parent
moved contributing back to parent

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* add PR template

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved to parent folder

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* moved meta files to .github folder

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* Analysis.py v 3.0.1

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* updated test_analysis for submodules, and added missing numpy import in Sort.py

* fixed item one of Issue #58

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* readded cache searching in postCreateCommand

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* added myself as an author

* feat: created kivy gui boilerplate

* added Kivy to requirements.txt

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* feat: gui with placeholders

* fix: changed config.json path

* migrated docker base image to debian

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* style: spaces to tabs

* migrated to ubuntu

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed issues

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fix: docker build?

* fix: use ubuntu bionic

* fix: get kivy installed

* @ltcptgeneral can't spell

* optim dockerfile for not installing unused packages

* install basic stuff while building the container

* use prebuilt image for development

* install pylint on base image

* rename and use new kivy

* tests: added tests for Array and CorrelationTest

Both are not working due to errors

* use new thing

* use 20.04 base

* symlink pip3 to pip

* use pip instead of pip3

* equation.Expression.py v 0.0.1-alpha
added corresponding .pyc to .gitignore

* parser.py v 0.0.2-alpha

* added pyparsing to requirements.txt

* parser v 0.0.4-alpha

* Equation v 0.0.1-alpha

* added Equation to tra_analysis imports

* tests: New unit tests for submoduling (#66)

* feat: created kivy gui boilerplate

* migrated docker base image to debian

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* migrated to ubuntu

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed issues

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fix: docker build?

* fix: use ubuntu bionic

* fix: get kivy installed

* @ltcptgeneral can't spell

* optim dockerfile for not installing unused packages

* install basic stuff while building the container

* use prebuilt image for development

* install pylint on base image

* rename and use new kivy

* tests: added tests for Array and CorrelationTest

Both are not working due to errors

* fix: Array no longer has *args and CorrelationTest functions no longer have self in the arguments

* use new thing

* use 20.04 base

* symlink pip3 to pip

* use pip instead of pip3

* tra_analysis v 2.1.0-alpha.2
SVM v 1.0.1
added unvalidated SVM unit tests

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* fixed version number

Signed-off-by: ltcptgeneral <learthurgo@gmail.com>

* tests: added tests for ClassificationMetric

* partially fixed and commented out svm unit tests

* fixed some SVM unit tests

* added installing pytest to devcontainer.json

* fix: small fixes to KNN

Namely, removing self from parameters and passing correct arguments to KNeighborsClassifier constructor

* fix, test: Added tests for KNN and NaiveBayes.

Also made some small fixes in KNN, NaiveBayes, and RegressionMetric

* test: finished unit tests except for StatisticalTest

Also made various small fixes and style changes

* StatisticalTest v 1.0.1

* fixed RegressionMetric unit test
temporarily disabled CorrelationTest unit tests

* tra_analysis v 2.1.0-alpha.3

* readded __all__

* fix: floating point issues in unit tests for CorrelationTest

Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: ltcptgeneral <learthurgo@gmail.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: jzpan1 <panzhenyu2014@gmail.com>

* fixed depreciated escape sequences

* ficed tests, indent, import in test_analysis

* changed version to 3.0.0
added backwards compatibility

* ficed pytest install in container

* removed GUI changes

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* incremented version to rc.1 (release candidate 1)

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* fixed NaiveBayes __changelog__

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* fix: __setitem__  == to single =

* Array v 1.0.1

* Revert "Array v 1.0.1"

This reverts commit 59783b79f7.

* Array v 1.0.1

* Array.py v 1.0.2
added more Array unit tests

* cleaned .gitignore
tra_analysis v 3.0.0-rc2

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* added *.pyc to gitignore
finished subdividing test_analysis

* feat: gui layout + basic func

* Froze and removed superscript (data-analysis)

* remove data-analysis deps install for devcontainer

* tukey pairwise comparison and multicomparison but no critical q-values

* quick patch for devcontainer.json

* better fix for devcontainer.json

* fixed some styling in StatisticalTest
removed print statement in StatisticalTest unit tests

* update analysis tests to be more effecient

* don't use loop for test_nativebayes

* removed useless secondary docker files

* tra-analysis v 3.0.0

Co-authored-by: James Pan <panzhenyu2014@gmail.com>
Co-authored-by: AGawde05 <agawde05@gmail.com>
Co-authored-by: zpan1 <72054510+zpan1@users.noreply.github.com>
Co-authored-by: Dev Singh <dev@devksingh.com>
Co-authored-by: = <=>
Co-authored-by: Dev Singh <dsingh@imsa.edu>
Co-authored-by: zpan1 <zpan@imsa.edu>
2021-04-28 19:33:50 -05:00
Dev Singh
c48c512cf6
Implement fitting to circle using LSC and HyperFit (#45)
* chore: add pylint to devcontainer

Signed-off-by: Dev Singh <dev@devksingh.com>

* feat: init LSC fitting

cuda and cpu-based LSC fitting using cupy and numpy

Signed-off-by: Dev Singh <dev@devksingh.com>

* docs: add changelog entry and module to class list

Signed-off-by: Dev Singh <dev@devksingh.com>

* docs: fix typo in comment

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: only import cupy if cuda available

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: move to own file, abandon cupy

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: remove numba dep

Signed-off-by: Dev Singh <dev@devksingh.com>

* deps: remove cupy dep

Signed-off-by: Dev Singh <dev@devksingh.com>

* feat: add tests

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: correct indentation

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: variable names

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: add self when refering to coords

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: numpy ordering

Signed-off-by: Dev Singh <dev@devksingh.com>

* docs: remove version bump, nomaintain

add notice that module is not actively maintained, may be removed in future release

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix: remove hyperfit as not being impled

Signed-off-by: Dev Singh <dev@devksingh.com>
2020-09-24 21:06:30 -05:00
Arthur Lu
fa7216d4e0 modified setup.py for analysis package v 2.1.0
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-20 00:50:14 +00:00
Arthur Lu
ff9ad078e5 analysis.py v 2.3.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-19 23:14:46 +00:00
Arthur Lu
cd869c0a8e analysis.py v 2.3.0
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-19 22:04:24 +00:00
Arthur Lu
f1982eb93d analysis.py v 2.2.3
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-18 21:55:59 +00:00
Arthur Lu
3763cb041f analysis.py v 2.2.2
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-09-17 02:11:44 +00:00
Arthur Lu
2f84debda7 removed old bins under analysis-master/dist/
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-08-10 21:37:41 +00:00
Arthur Lu
c803208eb8 analysis.py v 2.2.1
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-08-10 21:25:25 +00:00
Arthur Lu
135350293c
Merge branch 'master' into tra-service 2020-08-10 16:11:38 -05:00
Arthur Lu
9a3181a92b renamed analysis folder to tra_analysis
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-08-10 21:01:50 +00:00
Dev Singh
73da5fa68b docs
Signed-off-by: Dev Singh <dev@devksingh.com>
2020-08-10 14:53:22 -05:00
Dev Singh
7be57f7e7e build v2.0.3
Signed-off-by: Dev Singh <dev@devksingh.com>
2020-08-10 14:52:49 -05:00
Dev Singh
5fd5e32cb1
Implement CD with building on tags to PyPI (#34)
* Create python-publish.yml

* populated publish-analysis.yml
moved legacy versions of analysis to seperate subfolder

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* attempt to fix issue with publish action

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* another attempt o fix publish-analysis.yml

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* this should work now

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* pypa can't take just one package so i'm trying all

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* this should totally work now

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* trying removing custom dir

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* rename analysis to tra_analysis, bump version to 2.0.0

* remove old packages which are already on github releases

* remove pycache

* removed ipynb_checkpoints

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* build

* do the dir thing

* trying removing custom dir

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
Signed-off-by: Dev Singh <dev@devksingh.com>

* rename analysis to tra_analysis, bump version to 2.0.0

Signed-off-by: Dev Singh <dev@devksingh.com>

* remove old packages which are already on github releases

Signed-off-by: Dev Singh <dev@devksingh.com>

* remove pycache

Signed-off-by: Dev Singh <dev@devksingh.com>

* build

Signed-off-by: Dev Singh <dev@devksingh.com>

* removed ipynb_checkpoints

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
Signed-off-by: Dev Singh <dev@devksingh.com>

* do the dir thing

Signed-off-by: Dev Singh <dev@devksingh.com>

* Revert "do the dir thing"

This reverts commit 2eb7ffca8d.

* correct dir

* set correct yaml positions

Signed-off-by: Dev Singh <dev@devksingh.com>

* attempt to set correct dir

Signed-off-by: Dev Singh <dev@devksingh.com>

* run on tags only

Signed-off-by: Dev Singh <dev@devksingh.com>

* remove all caches from vcs

Signed-off-by: Dev Singh <dev@devksingh.com>

* bump version for testing

Signed-off-by: Dev Singh <dev@devksingh.com>

* remove broke build

Signed-off-by: Dev Singh <dev@devksingh.com>

* dont upload dists to github

Signed-off-by: Dev Singh <dev@devksingh.com>

* bump to 2.0.2 for testing

Signed-off-by: Dev Singh <dev@devksingh.com>

* fix yaml

Signed-off-by: Dev Singh <dev@devksingh.com>

* update docs

Signed-off-by: Dev Singh <dev@devksingh.com>

* add to readme

Signed-off-by: Dev Singh <dev@devksingh.com>

* run only on master

Signed-off-by: Dev Singh <dev@devksingh.com>

Co-authored-by: Arthur Lu <learthurgo@gmail.com>
Co-authored-by: Dev Singh <dsingh@CentaurusRidge.localdomain>
2020-08-10 14:29:51 -05:00
Arthur Lu
a59e509bc8 made changes described in Issue#32
changed setup.py to also reflect versioning changes

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-07-30 19:05:07 +00:00
Arthur Lu
5e52155fd0
Merge pull request #31 from titanscout2022/master
merge changes from master into tra-service
2020-07-18 23:25:55 -05:00
Arthur Lu
16fb21001a added negatives to analysis unit tests
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-07-12 13:57:24 -05:00
Arthur Lu
430822cdeb added unit tests for analysis.Sort algorithms
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-07-11 21:53:16 +00:00
Arthur Lu
648ac945ac analysis v 1.2.2.000
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-07-05 05:30:48 +00:00
Arthur Lu
51f14de0d2 fixed latest.whl to follow format for wheel files
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-06-10 20:56:13 +00:00
Arthur Lu
fa478314da added data-analysis requirements to devcontainer build
added auto pip intsall latest analysis.py whl

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-06-10 18:25:41 +00:00
Arthur Lu
1d5a67c4f7 analysis.py v 1.2.1.004
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-22 00:37:39 +00:00
Arthur Lu
4f439d6094
Merge service-dev changes with master (#24)
* added config.json
removed old config files

Signed-off-by: Arthur <learthurgo@gmail.com>

* superscript.py v 0.0.6.000

Signed-off-by: Arthur <learthurgo@gmail.com>

* changed data.py

Signed-off-by: Arthur <learthurgo@gmail.com>

* changes to config.json

Signed-off-by: Arthur <learthurgo@gmail.com>

* removed cells from visualize_pit.py

Signed-off-by: Arthur <learthurgo@gmail.com>

* more changes to visualize_pit.py

Signed-off-by: Arthur <learthurgo@gmail.com>

* added analysis-master/metrics/__pycache__ to git ignore
moved pit configs in config.json to the borrom
superscript.py v 0.0.6.001

Signed-off-by: Arthur <learthurgo@gmail.com>

* removed old database key

Signed-off-by: Arthur <learthurgo@gmail.com>

* adjusted config files

Signed-off-by: Arthur <learthurgo@gmail.com>

* Delete config-pop.json

* fixed .gitignore

Signed-off-by: Arthur <learthurgo@gmail.com>

* analysis.py 1.2.1.003
added team kv pair to config.json

Signed-off-by: Arthur <learthurgo@gmail.com>

* superscript.py v 0.0.6.002

Signed-off-by: Arthur <learthurgo@gmail.com>

* finished app.py API
made minute changes to parentheses use in various packages

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* bug fixes in app.py

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* bug fixes in app.py

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* made changes to .gitignore

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* made changes to .gitignore

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* deleted a __pycache__ folder from metrics

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* more changes to .gitignore

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* additions to app.py

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* renamed app.py to api.py

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* removed extranneous files

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* renamed api.py to tra.py
removed rest api calls from tra.py

* renamed api.py to tra.py
removed rest api calls from tra.py

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* removed flask import from tra.py

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* changes to devcontainer.json

Signed-off-by: Arthur Lu <learthurgo@gmail.com>

* fixed unit tests to be correct
removed some tests regressions because of potential function overflow
removed trueskill unit test because of slight deviation chance

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-20 08:52:38 -05:00
Arthur Lu
3dd24dcd30 fixed bug in analysis unit tests
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-19 18:19:02 +00:00
Arthur Lu
641905e87a finally fixed issues
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-18 16:12:22 -05:00
Arthur Lu
3daa12a3da changes
superscript testing still refuses to collect any tests

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-18 16:07:02 -05:00
Arthur Lu
f55f3cb7d1 populated analysis unit test
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-18 14:59:24 -05:00
Arthur Lu
386b7c75ee added items to .gitignore
renamed pythonpackage.yml to ut-analysis.yml
populated ut-analysis.yml
fixed spelling
added ut-superscript.py

Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-16 20:04:31 -05:00
Arthur Lu
27feb0bf93 moved unit-test.py outside the analysis folder
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-16 19:41:19 -05:00
Arthur Lu
37c247aa46 created unit-test.py
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-16 19:33:56 -05:00
Arthur Lu
dd49f6724f
Merge branch 'master' into master-staged 2020-05-15 16:05:52 -05:00
Arthur Lu
3fdae646b8 analysis.py v 1.2.1.003
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-15 14:48:26 -05:00
Arthur Lu
8f8fb6c156 analysis.py v 1.2.2.000
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-14 23:36:28 -05:00
Arthur Lu
30b39aafff
Merge pull request #16 from titanscout2022/master
pull recent changes into equation.py-testing
2020-05-14 23:22:03 -05:00
ltcptgeneral
7e37dd72bb analysis.py v 1.2.1.002
Signed-off-by: Arthur Lu <learthurgo@gmail.com>
2020-05-13 11:35:46 -05:00
ltcptgeneral
a9014c5d34 changed data analysis folder to data-analysis
added egg-info and build folders to git ignore
deleted egg-info and build folders
2020-05-12 20:54:19 -05:00
ltcptgeneral
230e98a745 9 2020-05-12 20:48:45 -05:00
ltcptgeneral
6d544a434e readded equation.ipynb 2020-05-12 20:46:42 -05:00
ltcptgeneral
952981cdb9 bug fixes 2020-05-12 20:39:23 -05:00
ltcptgeneral
6fee42f6d2 bug fixes 2020-05-12 20:21:11 -05:00
ltcptgeneral
24f8961500 analysis.py v 1.2.1.001 2020-05-12 20:19:58 -05:00
ltcptgeneral
db8fbbf068 visualization.py v 1.0.0.001 2020-05-05 22:37:32 -05:00
ltcptgeneral
64ae1b7026 analysis.py v 1.2.1.000 2020-05-04 14:50:36 -05:00
ltcptgeneral
4498387ac5 analysis.py v 1.2.0.006 2020-05-04 11:59:25 -05:00
ltcptgeneral
7a362476c9 fixed indent part 2 2020-05-01 23:16:32 -05:00
ltcptgeneral
b79cedae68 fixed indentation 2020-05-01 23:14:19 -05:00