tra-analysis/analysis-master/tra_analysis/equation/parser/Hybrid_Utils/equation_base.py

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tra-analysis v 3.0.0 aggregate PR (#73) * reflected doc changes to README.md Signed-off-by: Arthur Lu <learthurgo@gmail.com> * tra_analysis v 2.1.0-alpha.1 Signed-off-by: Arthur Lu <learthurgo@gmail.com> * changed setup.py to use __version__ from source added Topic and keywords Signed-off-by: Arthur Lu <learthurgo@gmail.com> * updated Supported Platforms in README.md Signed-off-by: Arthur Lu <learthurgo@gmail.com> * moved required files back to parent Signed-off-by: Arthur Lu <learthurgo@gmail.com> * moved security back to parent Signed-off-by: Arthur Lu <learthurgo@gmail.com> * moved security back to parent moved contributing back to parent Signed-off-by: Arthur Lu <learthurgo@gmail.com> * add PR template Signed-off-by: Arthur Lu <learthurgo@gmail.com> * moved to parent folder Signed-off-by: Arthur Lu <learthurgo@gmail.com> * moved meta files to .github folder Signed-off-by: Arthur Lu <learthurgo@gmail.com> * Analysis.py v 3.0.1 Signed-off-by: Arthur Lu <learthurgo@gmail.com> * updated test_analysis for submodules, and added missing numpy import in Sort.py * fixed item one of Issue #58 Signed-off-by: Arthur Lu <learthurgo@gmail.com> * readded cache searching in postCreateCommand Signed-off-by: Arthur Lu <learthurgo@gmail.com> * added myself as an author * feat: created kivy gui boilerplate * added Kivy to requirements.txt Signed-off-by: Arthur Lu <learthurgo@gmail.com> * feat: gui with placeholders * fix: changed config.json path * migrated docker base image to debian Signed-off-by: ltcptgeneral <learthurgo@gmail.com> * style: spaces to tabs * migrated to ubuntu Signed-off-by: ltcptgeneral <learthurgo@gmail.com> * fixed issues Signed-off-by: ltcptgeneral <learthurgo@gmail.com> * fix: docker build? * fix: use ubuntu bionic * fix: get kivy installed * @ltcptgeneral can't spell * optim dockerfile for not installing unused packages * install basic stuff while building the container * use prebuilt image for development * install pylint on base image * rename and use new kivy * tests: added tests for Array and CorrelationTest Both are not working due to errors * use new thing * use 20.04 base * symlink pip3 to pip * use pip instead of pip3 * equation.Expression.py v 0.0.1-alpha added corresponding .pyc to .gitignore * parser.py v 0.0.2-alpha * added pyparsing to requirements.txt * parser v 0.0.4-alpha * Equation v 0.0.1-alpha * added Equation to tra_analysis imports * tests: New unit tests for submoduling (#66) * feat: created kivy gui boilerplate * migrated docker base image to debian Signed-off-by: ltcptgeneral <learthurgo@gmail.com> * migrated to ubuntu Signed-off-by: ltcptgeneral <learthurgo@gmail.com> * fixed issues Signed-off-by: ltcptgeneral <learthurgo@gmail.com> * fix: docker build? * fix: use ubuntu bionic * fix: get kivy installed * @ltcptgeneral can't spell * optim dockerfile for not installing unused packages * install basic stuff while building the container * use prebuilt image for development * install pylint on base image * rename and use new kivy * tests: added tests for Array and CorrelationTest Both are not working due to errors * fix: Array no longer has *args and CorrelationTest functions no longer have self in the arguments * use new thing * use 20.04 base * symlink pip3 to pip * use pip instead of pip3 * tra_analysis v 2.1.0-alpha.2 SVM v 1.0.1 added unvalidated SVM unit tests Signed-off-by: ltcptgeneral <learthurgo@gmail.com> * fixed version number Signed-off-by: ltcptgeneral <learthurgo@gmail.com> * tests: added tests for ClassificationMetric * partially fixed and commented out svm unit tests * fixed some SVM unit tests * added installing pytest to devcontainer.json * fix: small fixes to KNN Namely, removing self from parameters and passing correct arguments to KNeighborsClassifier constructor * fix, test: Added tests for KNN and NaiveBayes. Also made some small fixes in KNN, NaiveBayes, and RegressionMetric * test: finished unit tests except for StatisticalTest Also made various small fixes and style changes * StatisticalTest v 1.0.1 * fixed RegressionMetric unit test temporarily disabled CorrelationTest unit tests * tra_analysis v 2.1.0-alpha.3 * readded __all__ * fix: floating point issues in unit tests for CorrelationTest Co-authored-by: AGawde05 <agawde05@gmail.com> Co-authored-by: ltcptgeneral <learthurgo@gmail.com> Co-authored-by: Dev Singh <dev@devksingh.com> Co-authored-by: jzpan1 <panzhenyu2014@gmail.com> * fixed depreciated escape sequences * ficed tests, indent, import in test_analysis * changed version to 3.0.0 added backwards compatibility * ficed pytest install in container * removed GUI changes Signed-off-by: Arthur Lu <learthurgo@gmail.com> * incremented version to rc.1 (release candidate 1) Signed-off-by: Arthur Lu <learthurgo@gmail.com> * fixed NaiveBayes __changelog__ Signed-off-by: Arthur Lu <learthurgo@gmail.com> * fix: __setitem__ == to single = * Array v 1.0.1 * Revert "Array v 1.0.1" This reverts commit 59783b79f7451586bc9741794589e00f0c625348. * Array v 1.0.1 * Array.py v 1.0.2 added more Array unit tests * cleaned .gitignore tra_analysis v 3.0.0-rc2 Signed-off-by: Arthur Lu <learthurgo@gmail.com> * added *.pyc to gitignore finished subdividing test_analysis * feat: gui layout + basic func * Froze and removed superscript (data-analysis) * remove data-analysis deps install for devcontainer * tukey pairwise comparison and multicomparison but no critical q-values * quick patch for devcontainer.json * better fix for devcontainer.json * fixed some styling in StatisticalTest removed print statement in StatisticalTest unit tests * update analysis tests to be more effecient * don't use loop for test_nativebayes * removed useless secondary docker files * tra-analysis v 3.0.0 Co-authored-by: James Pan <panzhenyu2014@gmail.com> Co-authored-by: AGawde05 <agawde05@gmail.com> Co-authored-by: zpan1 <72054510+zpan1@users.noreply.github.com> Co-authored-by: Dev Singh <dev@devksingh.com> Co-authored-by: = <=> Co-authored-by: Dev Singh <dsingh@imsa.edu> Co-authored-by: zpan1 <zpan@imsa.edu>
2021-04-29 00:33:50 +00:00
try:
import numpy as np
has_numpy = True
except ImportError:
import math
has_numpy = False
try:
import scipy.constants
has_scipy = True
except ImportError:
has_scipy = False
import operator as op
from .similar import sim, nsim, gsim, lsim
def equation_extend(core):
def product(*args):
if len(args) == 1 and has_numpy:
return np.prod(args[0])
else:
return reduce(op.mul,args,1)
def sumargs(*args):
if len(args) == 1:
return sum(args[0])
else:
return sum(args)
core.addOp('+',"({0:s} + {1:s})","\\left({0:s} + {1:s}\\right)",False,3,op.add)
core.addOp('-',"({0:s} - {1:s})","\\left({0:s} - {1:s}\\right)",False,3,op.sub)
core.addOp('*',"({0:s} * {1:s})","\\left({0:s} \\times {1:s}\\right)",False,2,op.mul)
core.addOp('/',"({0:s} / {1:s})","\\frac{{{0:s}}}{{{1:s}}}",False,2,op.truediv)
core.addOp('%',"({0:s} % {1:s})","\\left({0:s} \\bmod {1:s}\\right)",False,2,op.mod)
core.addOp('^',"({0:s} ^ {1:s})","{0:s}^{{{1:s}}}",False,1,op.pow)
core.addOp('**',"({0:s} ^ {1:s})","{0:s}^{{{1:s}}}",False,1,op.pow)
core.addOp('&',"({0:s} & {1:s})","\\left({0:s} \\land {1:s}\\right)",False,4,op.and_)
core.addOp('|',"({0:s} | {1:s})","\\left({0:s} \\lor {1:s}\\right)",False,4,op.or_)
core.addOp('</>',"({0:s} </> {1:s})","\\left({0:s} \\oplus {1:s}\\right)",False,4,op.xor)
core.addOp('&|',"({0:s} </> {1:s})","\\left({0:s} \\oplus {1:s}\\right)",False,4,op.xor)
core.addOp('|&',"({0:s} </> {1:s})","\\left({0:s} \\oplus {1:s}\\right)",False,4,op.xor)
core.addOp('==',"({0:s} == {1:s})","\\left({0:s} = {1:s}\\right)",False,5,op.eq)
core.addOp('=',"({0:s} == {1:s})","\\left({0:s} = {1:s}\\right)",False,5,op.eq)
core.addOp('~',"({0:s} ~ {1:s})","\\left({0:s} \\approx {1:s}\\right)",False,5,sim)
core.addOp('!~',"({0:s} !~ {1:s})","\\left({0:s} \\not\\approx {1:s}\\right)",False,5,nsim)
core.addOp('!=',"({0:s} != {1:s})","\\left({0:s} \\neg {1:s}\\right)",False,5,op.ne)
core.addOp('<>',"({0:s} != {1:s})","\\left({0:s} \\neg {1:s}\\right)",False,5,op.ne)
core.addOp('><',"({0:s} != {1:s})","\\left({0:s} \\neg {1:s}\\right)",False,5,op.ne)
core.addOp('<',"({0:s} < {1:s})","\\left({0:s} < {1:s}\\right)",False,5,op.lt)
core.addOp('>',"({0:s} > {1:s})","\\left({0:s} > {1:s}\\right)",False,5,op.gt)
core.addOp('<=',"({0:s} <= {1:s})","\\left({0:s} \\leq {1:s}\\right)",False,5,op.le)
core.addOp('>=',"({0:s} >= {1:s})","\\left({0:s} \\geq {1:s}\\right)",False,5,op.ge)
core.addOp('=<',"({0:s} <= {1:s})","\\left({0:s} \\leq {1:s}\\right)",False,5,op.le)
core.addOp('=>',"({0:s} >= {1:s})","\\left({0:s} \\geq {1:s}\\right)",False,5,op.ge)
core.addOp('<~',"({0:s} <~ {1:s})","\\left({0:s} \lessapprox {1:s}\\right)",False,5,lsim)
core.addOp('>~',"({0:s} >~ {1:s})","\\left({0:s} \\gtrapprox {1:s}\\right)",False,5,gsim)
core.addOp('~<',"({0:s} <~ {1:s})","\\left({0:s} \lessapprox {1:s}\\right)",False,5,lsim)
core.addOp('~>',"({0:s} >~ {1:s})","\\left({0:s} \\gtrapprox {1:s}\\right)",False,5,gsim)
core.addUnaryOp('!',"(!{0:s})","\\neg{0:s}",op.not_)
core.addUnaryOp('-',"-{0:s}","-{0:s}",op.neg)
core.addFn('abs',"abs({0:s})","\\left|{0:s}\\right|",1,op.abs)
core.addFn('sum',"sum({0:s})","\\sum\\left({0:s}\\right)",'+',sumargs)
core.addFn('prod',"prod({0:s})","\\prod\\left({0:s}\\right)",'+',product)
if has_numpy:
core.addFn('floor',"floor({0:s})","\\lfloor {0:s} \\rfloor",1,np.floor)
core.addFn('ceil',"ceil({0:s})","\\lceil {0:s} \\rceil",1,np.ceil)
core.addFn('round',"round({0:s})","\\lfloor {0:s} \\rceil",1,np.round)
core.addFn('sin',"sin({0:s})","\\sin\\left({0:s}\\right)",1,np.sin)
core.addFn('cos',"cos({0:s})","\\cos\\left({0:s}\\right)",1,np.cos)
core.addFn('tan',"tan({0:s})","\\tan\\left({0:s}\\right)",1,np.tan)
core.addFn('re',"re({0:s})","\\Re\\left({0:s}\\right)",1,np.real)
core.addFn('im',"re({0:s})","\\Im\\left({0:s}\\right)",1,np.imag)
core.addFn('sqrt',"sqrt({0:s})","\\sqrt{{{0:s}}}",1,np.sqrt)
core.addConst("pi",np.pi)
core.addConst("e",np.e)
core.addConst("Inf",np.Inf)
core.addConst("NaN",np.NaN)
else:
core.addFn('floor',"floor({0:s})","\\lfloor {0:s} \\rfloor",1,math.floor)
core.addFn('ceil',"ceil({0:s})","\\lceil {0:s} \\rceil",1,math.ceil)
core.addFn('round',"round({0:s})","\\lfloor {0:s} \\rceil",1,round)
core.addFn('sin',"sin({0:s})","\\sin\\left({0:s}\\right)",1,math.sin)
core.addFn('cos',"cos({0:s})","\\cos\\left({0:s}\\right)",1,math.cos)
core.addFn('tan',"tan({0:s})","\\tan\\left({0:s}\\right)",1,math.tan)
core.addFn('re',"re({0:s})","\\Re\\left({0:s}\\right)",1,complex.real)
core.addFn('im',"re({0:s})","\\Im\\left({0:s}\\right)",1,complex.imag)
core.addFn('sqrt',"sqrt({0:s})","\\sqrt{{{0:s}}}",1,math.sqrt)
core.addConst("pi",math.pi)
core.addConst("e",math.e)
core.addConst("Inf",float("Inf"))
core.addConst("NaN",float("NaN"))
if has_scipy:
core.addConst("h",scipy.constants.h)
core.addConst("hbar",scipy.constants.hbar)
core.addConst("m_e",scipy.constants.m_e)
core.addConst("m_p",scipy.constants.m_p)
core.addConst("m_n",scipy.constants.m_n)
core.addConst("c",scipy.constants.c)
core.addConst("N_A",scipy.constants.N_A)
core.addConst("mu_0",scipy.constants.mu_0)
core.addConst("eps_0",scipy.constants.epsilon_0)
core.addConst("k",scipy.constants.k)
core.addConst("G",scipy.constants.G)
core.addConst("g",scipy.constants.g)
core.addConst("q",scipy.constants.e)
core.addConst("R",scipy.constants.R)
core.addConst("sigma",scipy.constants.e)
core.addConst("Rb",scipy.constants.Rydberg)