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major optimization by packing wavefront values

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This commit is contained in:
Arthur Lu
2024-11-05 18:28:28 +00:00
parent 8679c51fb0
commit 3da3ddf10c
6 changed files with 154 additions and 146 deletions
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12
pkg/debug.go
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@@ -1,5 +1,3 @@
//go:build debug
package wfa
import (
@@ -46,8 +44,9 @@ func (w *WavefrontComponent) String(score int) string {
hi := w.hi.Get(i)
// print out wavefront matrix
for k := min_lo; k <= max_hi; k++ {
if w.W.Valid(i) && w.W.Get(i).Valid(k) {
s = s + fmt.Sprintf("%02d", w.W.Get(i).Get(k))
valid, val, _ := UnpackWavefrontValue(w.W.Get(i).Get(k))
if valid {
s = s + fmt.Sprintf("%02d", val)
} else if k < lo || k > hi {
s = s + "--"
} else {
@@ -61,8 +60,9 @@ func (w *WavefrontComponent) String(score int) string {
s = s + "]\t["
// print out traceback matrix
for k := min_lo; k <= max_hi; k++ {
if w.A.Valid(i) && w.A.Get(i).Valid(k) {
s = s + traceback_str[w.A.Get(i).Get(k)]
valid, _, tb := UnpackWavefrontValue(w.W.Get(i).Get(k))
if valid {
s = s + traceback_str[tb]
} else if k < lo || k > hi {
s = s + "--"
} else {