79 lines
1.4 KiB
Go
79 lines
1.4 KiB
Go
|
package tests
|
||
|
|
|
||
|
|
import (
|
||
|
|
"bufio"
|
||
|
|
"encoding/json"
|
||
|
|
"os"
|
||
|
|
"strconv"
|
||
|
|
"strings"
|
||
|
|
"testing"
|
||
|
|
wfa "wfa/pkg"
|
||
|
|
|
||
|
|
"github.com/schollz/progressbar/v3"
|
||
|
|
)
|
||
|
|
|
||
|
|
const testJsonPath = "tests.json"
|
||
|
|
const testSequences = "sequences"
|
||
|
|
|
||
|
|
type TestPenalty struct {
|
||
|
|
M int `json:"m"`
|
||
|
|
X int `json:"x"`
|
||
|
|
O int `json:"o"`
|
||
|
|
E int `json:"e"`
|
||
|
|
}
|
||
|
|
|
||
|
|
type TestCase struct {
|
||
|
|
Penalties TestPenalty `json:"penalties"`
|
||
|
|
Solutions string `json:"solutions"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func TestWFA(t *testing.T) {
|
||
|
|
content, _ := os.ReadFile(testJsonPath)
|
||
|
|
|
||
|
|
var testMap map[string]TestCase
|
||
|
|
json.Unmarshal(content, &testMap)
|
||
|
|
|
||
|
|
for k, v := range testMap {
|
||
|
|
testName := k
|
||
|
|
|
||
|
|
testPenalties := wfa.Penalty{
|
||
|
|
M: v.Penalties.M,
|
||
|
|
X: v.Penalties.X,
|
||
|
|
O: v.Penalties.O,
|
||
|
|
E: v.Penalties.E,
|
||
|
|
}
|
||
|
|
|
||
|
|
sequencesFile, _ := os.Open(testSequences)
|
||
|
|
sequences := bufio.NewScanner(sequencesFile)
|
||
|
|
solutionsFile, _ := os.Open(v.Solutions)
|
||
|
|
solutions := bufio.NewScanner(solutionsFile)
|
||
|
|
|
||
|
|
bar := progressbar.Default(305, k)
|
||
|
|
|
||
|
|
idx := 0
|
||
|
|
|
||
|
|
for solutions.Scan() {
|
||
|
|
solution := solutions.Text()
|
||
|
|
expectedScore, _ := strconv.Atoi(strings.Split(solution, "\t")[0])
|
||
|
|
|
||
|
|
sequences.Scan()
|
||
|
|
s1 := sequences.Text()
|
||
|
|
s1 = s1[1:]
|
||
|
|
|
||
|
|
sequences.Scan()
|
||
|
|
s2 := sequences.Text()
|
||
|
|
s2 = s2[1:]
|
||
|
|
|
||
|
|
x := wfa.WFAlign(s1, s2, testPenalties, false)
|
||
|
|
gotScore := x.Score
|
||
|
|
|
||
|
|
if gotScore != -1*expectedScore {
|
||
|
|
t.Errorf(`test: %s#%d, s1: %s, s2: %s, got: %d, expected: %d\n`, testName, idx, s1, s2, gotScore, expectedScore)
|
||
|
|
}
|
||
|
|
|
||
|
|
idx++
|
||
|
|
bar.Add(1)
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|